Currently, we may fail to build the third-party libraries if we keep the outdated extracted data.
Considering the following scenario, Bob added patches to some libraries and Alice updates the codebase and builds
the third-party libraries. If Alice kept the outdated extracted data, she should fail to build the third-party libraries
because the patches are not applied due to the outdated `patched_marks`.
This PR introduces a way to clean the outdated data before building the third-party libraries.
43c8e7b465