#!/bin/env python __author__ = 'dongyun.zdy' import math import numpy as np from scipy.optimize import leastsq from scipy.optimize import curve_fit import sys from lmfit import Model import getopt import os # # def array_model_form(args): # # ( # # Nelem, # # ) = args # # Telem_ence = 0.00898860 # Telem_copy = 0.00631888 # # Nelem = args # # ELEM_PER_PAGE = 1024 # extend_cnt = math.ceil(math.log(float(Nelem)/ELEM_PER_PAGE, 2)) # if extend_cnt < 0: # extend_cnt = 0 # copy_cnt = ELEM_PER_PAGE * (math.pow(2, extend_cnt) - 1) # # total_cost = Telem_ence * Nelem # #total_cost += Tmem_alloc * extend_cnt # total_cost += Telem_copy * copy_cnt # # return total_cost def array_model_form(args, #Tstartup, Telem_ence, Telem_copy, #Tmem_alloc ): # ( # Nelem, # ) = args Nelem = args ELEM_PER_PAGE = 1024 extend_cnt = math.ceil(math.log(float(Nelem)/ELEM_PER_PAGE, 2)) if extend_cnt < 0: extend_cnt = 0 copy_cnt = ELEM_PER_PAGE * (math.pow(2, extend_cnt) - 1) total_cost = Telem_ence * Nelem #total_cost += Tmem_alloc * extend_cnt total_cost += Telem_copy * copy_cnt return total_cost def material_model_arr(arg_sets, # Tstartup, Telem_ence, Telem_copy, #Tmem_alloc ): res = [] for single_arg_set in arg_sets: res.append(array_model_form(single_arg_set, # Tstartup, Telem_ence, Telem_copy, #Tmem_alloc )) return np.array(res) material_model = Model(material_model_arr) # material_model.set_param_hint("Tstartup", min=0.0) material_model.set_param_hint("Telem_ence", min=0.0) material_model.set_param_hint("Telem_copy", min=0.0) #material_model.set_param_hint("Tmem_alloc", min=0.0) def extract_info_from_line(line): splited = line.split(",") line_info = [] for item in splited: line_info.append(float(item)) return line_info if __name__ == '__main__': #file_name = "scan_model.res.formal.prep" #out_file_name = "scan_model.fit" file_name = "array_result_final" out_file_name = "array_model" if os.path.exists(out_file_name): os.remove(out_file_name) #sys.argv.extend("-i arr.prep -o arr.model".split(" ")) output_fit_res = True wrong_arg = False opts,args = getopt.getopt(sys.argv[1:],"i:o:") for op, value in opts: if "-i" == op: file_name = value elif "-o" == op: output_fit_res = True out_file_name = value else: wrong_arg = True if wrong_arg: print "wrong arg" sys.exit(1) file = open(file_name, "r") arg_sets = [] times = [] case_params = [] for line in file: if line.startswith('#'): continue case_param = extract_info_from_line(line) case_params.append(case_param) arg_sets.append((case_param[0])) times.append(case_param[1]) file.close() arg_sets_np = np.array(arg_sets) times_np = np.array(times) #10, 0.20406430879623488, 0.016618100054245379, 14.0, 4.5, 37.0, -0.005, 0.5, -7.0 result = material_model.fit(times_np, arg_sets=arg_sets_np, # Tstartup=10.0, Telem_ence=1.0, Telem_copy=1.0, #Tmem_alloc=1.0 ) # res_line = str(result.best_values["Tstartup"]) + "," res_line = str(result.best_values["Telem_ence"]) + "," res_line += str(result.best_values["Telem_copy"])# + "," #res_line += str(result.best_values["Tmem_alloc"]) print result.fit_report() if output_fit_res: out_file = open(out_file_name, "w") out_file.write(res_line) out_file.close()